2021-09-01 12:23:13,491 INFO BenchmarkPipeline --- START PROCESSING 'SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507' --- 2021-09-01 12:23:13,491 INFO Sra2FastQ Accession: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR5453529.sra 2021-09-01 12:23:13,491 INFO Sra2FastQ Directory: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__ 2021-09-01 12:23:13,491 DEBUG SimpleSubprocess fastq-dump --split-3 -O /tmp/tmpe2wrxvi9 "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR5453529.sra" 2021-09-01 12:24:03,270 INFO SimpleSubprocess Sra2FastQ - 0:00:49 2021-09-01 12:24:03,270 DEBUG SimpleSubprocess gzip /tmp/tmpe2wrxvi9/* 2021-09-01 12:28:05,391 INFO SimpleSubprocess GZipFastQ - 0:04:02 2021-09-01 12:28:05,392 DEBUG SimpleSubprocess mkdir -p "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/fastq"; mv /tmp/tmpe2wrxvi9/SRR5453529_1.fastq.gz /tmp/tmpe2wrxvi9/SRR5453529_R1.fastq.gz; mv /tmp/tmpe2wrxvi9/SRR5453529_2.fastq.gz /tmp/tmpe2wrxvi9/SRR5453529_R2.fastq.gz; cp /tmp/tmpe2wrxvi9/*_R*.fastq* "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/fastq" 2021-09-01 12:28:06,293 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-01 12:28:06,413 INFO Sra2FastQ Accession: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR5453530.sra 2021-09-01 12:28:06,413 INFO Sra2FastQ Directory: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__ 2021-09-01 12:28:06,413 DEBUG SimpleSubprocess fastq-dump --split-3 -O /tmp/tmp_sutcwjn "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR5453530.sra" 2021-09-01 12:28:46,330 INFO SimpleSubprocess Sra2FastQ - 0:00:39 2021-09-01 12:28:46,330 DEBUG SimpleSubprocess gzip /tmp/tmp_sutcwjn/* 2021-09-01 12:32:12,012 INFO SimpleSubprocess GZipFastQ - 0:03:25 2021-09-01 12:32:12,013 DEBUG SimpleSubprocess mkdir -p "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/fastq"; mv /tmp/tmp_sutcwjn/SRR5453530_2.fastq.gz /tmp/tmp_sutcwjn/SRR5453530_R2.fastq.gz; mv /tmp/tmp_sutcwjn/SRR5453530_1.fastq.gz /tmp/tmp_sutcwjn/SRR5453530_R1.fastq.gz; cp /tmp/tmp_sutcwjn/*_R*.fastq* "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/fastq" 2021-09-01 12:32:12,799 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-01 12:32:12,906 INFO Sra2FastQ Accession: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR5453531.sra 2021-09-01 12:32:12,906 INFO Sra2FastQ Directory: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__ 2021-09-01 12:32:12,906 DEBUG SimpleSubprocess fastq-dump --split-3 -O /tmp/tmpym38lr84 "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR5453531.sra" 2021-09-01 12:33:03,395 INFO SimpleSubprocess Sra2FastQ - 0:00:50 2021-09-01 12:33:03,395 DEBUG SimpleSubprocess gzip /tmp/tmpym38lr84/* 2021-09-01 12:37:13,326 INFO SimpleSubprocess GZipFastQ - 0:04:09 2021-09-01 12:37:13,327 DEBUG SimpleSubprocess mkdir -p "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/fastq"; mv /tmp/tmpym38lr84/SRR5453531_2.fastq.gz /tmp/tmpym38lr84/SRR5453531_R2.fastq.gz; mv /tmp/tmpym38lr84/SRR5453531_1.fastq.gz /tmp/tmpym38lr84/SRR5453531_R1.fastq.gz; cp /tmp/tmpym38lr84/*_R*.fastq* "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/fastq" 2021-09-01 12:37:14,165 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-01 12:37:14,279 INFO Sra2FastQ Accession: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR5453514.sra 2021-09-01 12:37:14,279 INFO Sra2FastQ Directory: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__ 2021-09-01 12:37:14,279 DEBUG SimpleSubprocess fastq-dump --split-3 -O /tmp/tmp0tjzcjhf "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR5453514.sra" 2021-09-01 12:38:04,937 INFO SimpleSubprocess Sra2FastQ - 0:00:50 2021-09-01 12:38:04,937 DEBUG SimpleSubprocess gzip /tmp/tmp0tjzcjhf/* 2021-09-01 12:42:27,902 INFO SimpleSubprocess GZipFastQ - 0:04:22 2021-09-01 12:42:27,902 DEBUG SimpleSubprocess mkdir -p "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/fastq"; mv /tmp/tmp0tjzcjhf/SRR5453514_2.fastq.gz /tmp/tmp0tjzcjhf/SRR5453514_R2.fastq.gz; mv /tmp/tmp0tjzcjhf/SRR5453514_1.fastq.gz /tmp/tmp0tjzcjhf/SRR5453514_R1.fastq.gz; cp /tmp/tmp0tjzcjhf/*_R*.fastq* "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/fastq" 2021-09-01 12:42:28,888 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-01 12:42:29,024 INFO Sra2FastQ Accession: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR5453515.sra 2021-09-01 12:42:29,024 INFO Sra2FastQ Directory: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__ 2021-09-01 12:42:29,024 DEBUG SimpleSubprocess fastq-dump --split-3 -O /tmp/tmpqbqxeiv8 "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR5453515.sra" 2021-09-01 12:43:15,055 INFO SimpleSubprocess Sra2FastQ - 0:00:46 2021-09-01 12:43:15,055 DEBUG SimpleSubprocess gzip /tmp/tmpqbqxeiv8/* 2021-09-01 12:47:13,044 INFO SimpleSubprocess GZipFastQ - 0:03:57 2021-09-01 12:47:13,044 DEBUG SimpleSubprocess mkdir -p "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/fastq"; mv /tmp/tmpqbqxeiv8/SRR5453515_2.fastq.gz /tmp/tmpqbqxeiv8/SRR5453515_R2.fastq.gz; mv /tmp/tmpqbqxeiv8/SRR5453515_1.fastq.gz /tmp/tmpqbqxeiv8/SRR5453515_R1.fastq.gz; cp /tmp/tmpqbqxeiv8/*_R*.fastq* "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/fastq" 2021-09-01 12:47:13,870 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-01 12:47:13,981 INFO Sra2FastQ Accession: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR5453516.sra 2021-09-01 12:47:13,982 INFO Sra2FastQ Directory: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__ 2021-09-01 12:47:13,982 DEBUG SimpleSubprocess fastq-dump --split-3 -O /tmp/tmpcn6q4du1 "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR5453516.sra" 2021-09-01 12:48:05,860 INFO SimpleSubprocess Sra2FastQ - 0:00:51 2021-09-01 12:48:05,860 DEBUG SimpleSubprocess gzip /tmp/tmpcn6q4du1/* 2021-09-01 12:52:45,747 INFO SimpleSubprocess GZipFastQ - 0:04:39 2021-09-01 12:52:45,748 DEBUG SimpleSubprocess mkdir -p "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/fastq"; mv /tmp/tmpcn6q4du1/SRR5453516_2.fastq.gz /tmp/tmpcn6q4du1/SRR5453516_R2.fastq.gz; mv /tmp/tmpcn6q4du1/SRR5453516_1.fastq.gz /tmp/tmpcn6q4du1/SRR5453516_R1.fastq.gz; cp /tmp/tmpcn6q4du1/*_R*.fastq* "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/fastq" 2021-09-01 12:52:46,707 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-01 12:52:46,839 INFO Sra2FastQ Accession: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR5453505.sra 2021-09-01 12:52:46,839 INFO Sra2FastQ Directory: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__ 2021-09-01 12:52:46,839 DEBUG SimpleSubprocess fastq-dump --split-3 -O /tmp/tmp98ah1ula "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR5453505.sra" 2021-09-01 12:53:22,604 INFO SimpleSubprocess Sra2FastQ - 0:00:35 2021-09-01 12:53:22,604 DEBUG SimpleSubprocess gzip /tmp/tmp98ah1ula/* 2021-09-01 12:56:03,524 INFO SimpleSubprocess GZipFastQ - 0:02:40 2021-09-01 12:56:03,524 DEBUG SimpleSubprocess mkdir -p "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/fastq"; mv /tmp/tmp98ah1ula/SRR5453505_1.fastq.gz /tmp/tmp98ah1ula/SRR5453505_R1.fastq.gz; mv /tmp/tmp98ah1ula/SRR5453505_2.fastq.gz /tmp/tmp98ah1ula/SRR5453505_R2.fastq.gz; cp /tmp/tmp98ah1ula/*_R*.fastq* "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/fastq" 2021-09-01 12:56:04,046 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-01 12:56:04,119 INFO Sra2FastQ Accession: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR5453506.sra 2021-09-01 12:56:04,119 INFO Sra2FastQ Directory: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__ 2021-09-01 12:56:04,119 DEBUG SimpleSubprocess fastq-dump --split-3 -O /tmp/tmpqaweaip1 "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR5453506.sra" 2021-09-01 12:56:36,321 INFO SimpleSubprocess Sra2FastQ - 0:00:32 2021-09-01 12:56:36,322 DEBUG SimpleSubprocess gzip /tmp/tmpqaweaip1/* 2021-09-01 12:58:58,191 INFO SimpleSubprocess GZipFastQ - 0:02:21 2021-09-01 12:58:58,191 DEBUG SimpleSubprocess mkdir -p "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/fastq"; mv /tmp/tmpqaweaip1/SRR5453506_2.fastq.gz /tmp/tmpqaweaip1/SRR5453506_R2.fastq.gz; mv /tmp/tmpqaweaip1/SRR5453506_1.fastq.gz /tmp/tmpqaweaip1/SRR5453506_R1.fastq.gz; cp /tmp/tmpqaweaip1/*_R*.fastq* "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/fastq" 2021-09-01 12:58:58,692 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-01 12:58:58,760 INFO Sra2FastQ Accession: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR5453507.sra 2021-09-01 12:58:58,760 INFO Sra2FastQ Directory: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__ 2021-09-01 12:58:58,760 DEBUG SimpleSubprocess fastq-dump --split-3 -O /tmp/tmpwplu6t_6 "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR5453507.sra" 2021-09-01 12:59:40,255 INFO SimpleSubprocess Sra2FastQ - 0:00:41 2021-09-01 12:59:40,255 DEBUG SimpleSubprocess gzip /tmp/tmpwplu6t_6/* 2021-09-01 13:02:25,283 INFO SimpleSubprocess GZipFastQ - 0:02:45 2021-09-01 13:02:25,283 DEBUG SimpleSubprocess mkdir -p "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/fastq"; mv /tmp/tmpwplu6t_6/SRR5453507_1.fastq.gz /tmp/tmpwplu6t_6/SRR5453507_R1.fastq.gz; mv /tmp/tmpwplu6t_6/SRR5453507_2.fastq.gz /tmp/tmpwplu6t_6/SRR5453507_R2.fastq.gz; cp /tmp/tmpwplu6t_6/*_R*.fastq* "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/fastq" 2021-09-01 13:02:25,869 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-01 13:02:25,950 INFO Juicer Directory: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__ 2021-09-01 13:02:25,950 INFO Juicer Genome assembly: mm10 2021-09-01 13:02:25,950 INFO Juicer Genome FASTA path: /Data/DataBases/mm10/mm10_canonic.fa 2021-09-01 13:02:25,951 INFO Juicer Chrom sizes file path: /Data/DataBases/mm10/mm10_canonic.chrom.sizes 2021-09-01 13:02:25,951 INFO Juicer Enzyme: DpnII 2021-09-01 13:02:25,951 INFO Juicer Restriction sites path: /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt 2021-09-01 13:02:25,951 INFO Juicer Threads: 10 2021-09-02 13:38:17,869 INFO BenchmarkPipeline --- START PROCESSING 'SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507' --- 2021-09-02 13:38:17,870 INFO Juicer Directory: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__ 2021-09-02 13:38:17,870 INFO Juicer Genome assembly: mm10 2021-09-02 13:38:17,870 INFO Juicer Genome FASTA path: /Data/DataBases/mm10/mm10_canonic.fa 2021-09-02 13:38:17,870 INFO Juicer Chrom sizes file path: /Data/DataBases/mm10/mm10_canonic.chrom.sizes 2021-09-02 13:38:17,870 INFO Juicer Enzyme: DpnII 2021-09-02 13:38:17,870 INFO Juicer Restriction sites path: /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt 2021-09-02 13:38:17,870 INFO Juicer Threads: 10 2021-09-02 13:38:17,870 DEBUG SimpleSubprocess rm -rf "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits" 2021-09-02 13:38:17,878 INFO SimpleSubprocess RemoveTrash - 0:00:00 2021-09-02 13:38:17,879 DEBUG SimpleSubprocess bash "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh" -t 10 -D "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer" -g mm10 -z "/Data/DataBases/mm10/mm10_canonic.fa" -p "/Data/DataBases/mm10/mm10_canonic.chrom.sizes" -s DpnII -y "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt" -d "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__" 2021-09-02 15:51:21,661 INFO SimpleSubprocess Juicer - 2:13:03 2021-09-02 15:51:21,674 INFO Juicer Using /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt as site file (-: Looking for fastq files...fastq files exist (-: Aligning files matching /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/fastq/*_R*.fastq* to genome mm10 with site file /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt (-: Created /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits and /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned. bwa mem -SP5M -t 10 /Data/DataBases/mm10/mm10_canonic.fa /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453505_R1.fastq.gz /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453505_R2.fastq.gz > /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453505.fastq.gz.sam (-: Align of /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453505.fastq.gz.sam done successfully bwa mem -SP5M -t 10 /Data/DataBases/mm10/mm10_canonic.fa /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453506_R1.fastq.gz /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453506_R2.fastq.gz > /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453506.fastq.gz.sam (-: Align of /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453506.fastq.gz.sam done successfully bwa mem -SP5M -t 10 /Data/DataBases/mm10/mm10_canonic.fa /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453507_R1.fastq.gz /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453507_R2.fastq.gz > /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453507.fastq.gz.sam (-: Align of /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453507.fastq.gz.sam done successfully bwa mem -SP5M -t 10 /Data/DataBases/mm10/mm10_canonic.fa /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453514_R1.fastq.gz /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453514_R2.fastq.gz > /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453514.fastq.gz.sam (-: Align of /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453514.fastq.gz.sam done successfully bwa mem -SP5M -t 10 /Data/DataBases/mm10/mm10_canonic.fa /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453515_R1.fastq.gz /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453515_R2.fastq.gz > /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453515.fastq.gz.sam (-: Align of /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453515.fastq.gz.sam done successfully bwa mem -SP5M -t 10 /Data/DataBases/mm10/mm10_canonic.fa /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453516_R1.fastq.gz /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453516_R2.fastq.gz > /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453516.fastq.gz.sam (-: Align of /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453516.fastq.gz.sam done successfully bwa mem -SP5M -t 10 /Data/DataBases/mm10/mm10_canonic.fa /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453529_R1.fastq.gz /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453529_R2.fastq.gz > /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453529.fastq.gz.sam (-: Align of /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453529.fastq.gz.sam done successfully bwa mem -SP5M -t 10 /Data/DataBases/mm10/mm10_canonic.fa /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453530_R1.fastq.gz /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453530_R2.fastq.gz > /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453530.fastq.gz.sam (-: Align of /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453530.fastq.gz.sam done successfully bwa mem -SP5M -t 10 /Data/DataBases/mm10/mm10_canonic.fa /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453531_R1.fastq.gz /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453531_R2.fastq.gz > /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453531.fastq.gz.sam (-: Align of /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/splits/SRR5453531.fastq.gz.sam done successfully (-: Finished sorting all sorted files into a single merge. WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2021-09-02T15:17:48,767] [Globals.java:138] [main] Development mode is enabled Using 1 CPU thread(s) Not including fragment map Start preprocess Writing header Writing body ........................................................................................................................................................................................................................................ Writing footer Finished preprocess Calculating norms for zoom BP_2500000 Calculating norms for zoom BP_1000000 Calculating norms for zoom BP_500000 Calculating norms for zoom BP_250000 Calculating norms for zoom BP_100000 Calculating norms for zoom BP_50000 Calculating norms for zoom BP_25000 Calculating norms for zoom BP_10000 Calculating norms for zoom BP_5000 Calculating norms for zoom BP_1000 Finished writing norms WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2021-09-02T15:35:29,405] [Globals.java:138] [main] Development mode is enabled Using 1 CPU thread(s) Not including fragment map Start preprocess Writing header Writing body ........................................................................................................................................................................................................................................ Writing footer Finished preprocess Calculating norms for zoom BP_2500000 Calculating norms for zoom BP_1000000 Calculating norms for zoom BP_500000 Calculating norms for zoom BP_250000 Calculating norms for zoom BP_100000 Calculating norms for zoom BP_50000 Calculating norms for zoom BP_25000 Calculating norms for zoom BP_10000 Calculating norms for zoom BP_5000 Calculating norms for zoom BP_1000 Finished writing norms /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/common/juicer_tools is post-processing Hi-C for mm10 Data read from /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_30.hic. Motifs read from /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/references/motif ARROWHEAD: WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2021-09-02T15:51:21,337] [Globals.java:138] [main] Development mode is enabled Reading file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_30.hic Using 1 CPU thread(s) HiCCUPS: GPUs are not installed so HiCCUPs cannot be run (-: Postprocessing successfully completed, maps too sparse to annotate or GPUs unavailable (-: (-: Pipeline successfully completed (-: Run cleanup.sh to remove the splits directory Check /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned for results 2021-09-02 15:51:21,721 INFO MakeInterPairs Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/merged_nodups.txt 2021-09-02 15:51:21,721 INFO MakeInterPairs Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter.pairs.txt 2021-09-02 15:51:21,722 DEBUG SimpleSubprocess awk -F " " '{print $2 "\t" $3 "\t" $6 "\t" $7}' "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/merged_nodups.txt" > "/tmp/tmp6ao5wq_d/inter.pairs.txt" 2021-09-02 15:51:43,462 INFO SimpleSubprocess MakeInterPairs - 0:00:21 2021-09-02 15:51:43,463 DEBUG SimpleSubprocess cp "/tmp/tmp6ao5wq_d/inter.pairs.txt" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter.pairs.txt" 2021-09-02 15:51:44,028 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-02 15:51:44,103 INFO Pairs2Cool Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter.pairs.txt 2021-09-02 15:51:44,103 INFO Pairs2Cool Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_no_balanced_5kb.cool 2021-09-02 15:51:44,103 INFO Pairs2Cool Genome assembly: mm10 2021-09-02 15:51:44,103 INFO Pairs2Cool Chrom sizes file path: /Data/DataBases/mm10/mm10_canonic.chrom.sizes 2021-09-02 15:51:44,103 INFO Pairs2Cool Resolution [bp]: 5000 2021-09-02 15:51:44,104 DEBUG SimpleSubprocess cooler cload pairs -c1 1 -p1 2 -c2 3 -p2 4 --assembly mm10 "/Data/DataBases/mm10/mm10_canonic.chrom.sizes":5000 "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter.pairs.txt" "/tmp/tmpo215sui1/inter_no_balanced.cool" 2021-09-02 15:52:18,261 INFO SimpleSubprocess MakeCool - 0:00:34 2021-09-02 15:52:18,261 DEBUG SimpleSubprocess cp "/tmp/tmpo215sui1/inter_no_balanced.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_no_balanced_5kb.cool" 2021-09-02 15:52:18,283 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-02 15:52:18,285 INFO Pairs2Cool Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter.pairs.txt 2021-09-02 15:52:18,285 INFO Pairs2Cool Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_no_balanced_10kb.cool 2021-09-02 15:52:18,286 INFO Pairs2Cool Genome assembly: mm10 2021-09-02 15:52:18,286 INFO Pairs2Cool Chrom sizes file path: /Data/DataBases/mm10/mm10_canonic.chrom.sizes 2021-09-02 15:52:18,286 INFO Pairs2Cool Resolution [bp]: 10000 2021-09-02 15:52:18,286 DEBUG SimpleSubprocess cooler cload pairs -c1 1 -p1 2 -c2 3 -p2 4 --assembly mm10 "/Data/DataBases/mm10/mm10_canonic.chrom.sizes":10000 "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter.pairs.txt" "/tmp/tmpb2hhjrbr/inter_no_balanced.cool" 2021-09-02 15:52:45,770 INFO SimpleSubprocess MakeCool - 0:00:27 2021-09-02 15:52:45,771 DEBUG SimpleSubprocess cp "/tmp/tmpb2hhjrbr/inter_no_balanced.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_no_balanced_10kb.cool" 2021-09-02 15:52:45,788 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-02 15:52:45,790 INFO Pairs2Cool Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter.pairs.txt 2021-09-02 15:52:45,790 INFO Pairs2Cool Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_no_balanced_20kb.cool 2021-09-02 15:52:45,790 INFO Pairs2Cool Genome assembly: mm10 2021-09-02 15:52:45,790 INFO Pairs2Cool Chrom sizes file path: /Data/DataBases/mm10/mm10_canonic.chrom.sizes 2021-09-02 15:52:45,791 INFO Pairs2Cool Resolution [bp]: 20000 2021-09-02 15:52:45,791 DEBUG SimpleSubprocess cooler cload pairs -c1 1 -p1 2 -c2 3 -p2 4 --assembly mm10 "/Data/DataBases/mm10/mm10_canonic.chrom.sizes":20000 "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter.pairs.txt" "/tmp/tmp6syh6iap/inter_no_balanced.cool" 2021-09-02 15:53:11,107 INFO SimpleSubprocess MakeCool - 0:00:25 2021-09-02 15:53:11,107 DEBUG SimpleSubprocess cp "/tmp/tmp6syh6iap/inter_no_balanced.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_no_balanced_20kb.cool" 2021-09-02 15:53:11,123 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-02 15:53:11,124 INFO Pairs2Cool Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter.pairs.txt 2021-09-02 15:53:11,125 INFO Pairs2Cool Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_no_balanced_25kb.cool 2021-09-02 15:53:11,125 INFO Pairs2Cool Genome assembly: mm10 2021-09-02 15:53:11,125 INFO Pairs2Cool Chrom sizes file path: /Data/DataBases/mm10/mm10_canonic.chrom.sizes 2021-09-02 15:53:11,125 INFO Pairs2Cool Resolution [bp]: 25000 2021-09-02 15:53:11,125 DEBUG SimpleSubprocess cooler cload pairs -c1 1 -p1 2 -c2 3 -p2 4 --assembly mm10 "/Data/DataBases/mm10/mm10_canonic.chrom.sizes":25000 "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter.pairs.txt" "/tmp/tmpq2vjxll_/inter_no_balanced.cool" 2021-09-02 15:53:36,043 INFO SimpleSubprocess MakeCool - 0:00:24 2021-09-02 15:53:36,043 DEBUG SimpleSubprocess cp "/tmp/tmpq2vjxll_/inter_no_balanced.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_no_balanced_25kb.cool" 2021-09-02 15:53:36,058 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-02 15:53:36,059 INFO Pairs2Cool Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter.pairs.txt 2021-09-02 15:53:36,059 INFO Pairs2Cool Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_no_balanced_50kb.cool 2021-09-02 15:53:36,059 INFO Pairs2Cool Genome assembly: mm10 2021-09-02 15:53:36,059 INFO Pairs2Cool Chrom sizes file path: /Data/DataBases/mm10/mm10_canonic.chrom.sizes 2021-09-02 15:53:36,059 INFO Pairs2Cool Resolution [bp]: 50000 2021-09-02 15:53:36,060 DEBUG SimpleSubprocess cooler cload pairs -c1 1 -p1 2 -c2 3 -p2 4 --assembly mm10 "/Data/DataBases/mm10/mm10_canonic.chrom.sizes":50000 "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter.pairs.txt" "/tmp/tmpz7hjj387/inter_no_balanced.cool" 2021-09-02 15:53:59,357 INFO SimpleSubprocess MakeCool - 0:00:23 2021-09-02 15:53:59,357 DEBUG SimpleSubprocess cp "/tmp/tmpz7hjj387/inter_no_balanced.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_no_balanced_50kb.cool" 2021-09-02 15:53:59,372 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-02 15:53:59,376 INFO CTaleNormalize Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_no_balanced_5kb.cool 2021-09-02 15:53:59,376 INFO CTaleNormalize Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_5kb.cool 2021-09-02 15:53:59,376 INFO CTaleNormalize Capture: chr11:32,190,000-32,335,000 2021-09-02 15:53:59,376 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_no_balanced_5kb.cool" "/tmp/tmpalclulse/inter.cool" 2021-09-02 15:53:59,399 INFO SimpleSubprocess TempFiles - 0:00:00 2021-09-02 15:53:59,399 DEBUG SimpleSubprocess ctale_normalize "/tmp/tmpalclulse/inter.cool" "chr11:32,190,000-32,335,000" 2021-09-02 15:54:03,937 INFO SimpleSubprocess NormalizeCool - 0:00:04 2021-09-02 15:54:03,937 DEBUG SimpleSubprocess cp "/tmp/tmpalclulse/inter.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_5kb.cool" 2021-09-02 15:54:03,958 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-02 15:54:03,961 INFO CTaleNormalize Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_no_balanced_10kb.cool 2021-09-02 15:54:03,961 INFO CTaleNormalize Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_10kb.cool 2021-09-02 15:54:03,961 INFO CTaleNormalize Capture: chr11:32,190,000-32,335,000 2021-09-02 15:54:03,961 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_no_balanced_10kb.cool" "/tmp/tmpsrhy1r5z/inter.cool" 2021-09-02 15:54:03,979 INFO SimpleSubprocess TempFiles - 0:00:00 2021-09-02 15:54:03,980 DEBUG SimpleSubprocess ctale_normalize "/tmp/tmpsrhy1r5z/inter.cool" "chr11:32,190,000-32,335,000" 2021-09-02 15:54:06,366 INFO SimpleSubprocess NormalizeCool - 0:00:02 2021-09-02 15:54:06,366 DEBUG SimpleSubprocess cp "/tmp/tmpsrhy1r5z/inter.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_10kb.cool" 2021-09-02 15:54:06,387 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-02 15:54:06,389 INFO CTaleNormalize Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_no_balanced_20kb.cool 2021-09-02 15:54:06,389 INFO CTaleNormalize Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_20kb.cool 2021-09-02 15:54:06,389 INFO CTaleNormalize Capture: chr11:32,190,000-32,335,000 2021-09-02 15:54:06,389 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_no_balanced_20kb.cool" "/tmp/tmp92g9hlbe/inter.cool" 2021-09-02 15:54:06,407 INFO SimpleSubprocess TempFiles - 0:00:00 2021-09-02 15:54:06,407 DEBUG SimpleSubprocess ctale_normalize "/tmp/tmp92g9hlbe/inter.cool" "chr11:32,190,000-32,335,000" 2021-09-02 15:54:07,900 INFO SimpleSubprocess NormalizeCool - 0:00:01 2021-09-02 15:54:07,900 DEBUG SimpleSubprocess cp "/tmp/tmp92g9hlbe/inter.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_20kb.cool" 2021-09-02 15:54:07,919 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-02 15:54:07,921 INFO CTaleNormalize Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_no_balanced_25kb.cool 2021-09-02 15:54:07,921 INFO CTaleNormalize Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_25kb.cool 2021-09-02 15:54:07,921 INFO CTaleNormalize Capture: chr11:32,190,000-32,335,000 2021-09-02 15:54:07,921 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_no_balanced_25kb.cool" "/tmp/tmpj7a_g_oo/inter.cool" 2021-09-02 15:54:07,938 INFO SimpleSubprocess TempFiles - 0:00:00 2021-09-02 15:54:07,939 DEBUG SimpleSubprocess ctale_normalize "/tmp/tmpj7a_g_oo/inter.cool" "chr11:32,190,000-32,335,000" 2021-09-02 15:54:09,426 INFO SimpleSubprocess NormalizeCool - 0:00:01 2021-09-02 15:54:09,427 DEBUG SimpleSubprocess cp "/tmp/tmpj7a_g_oo/inter.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_25kb.cool" 2021-09-02 15:54:09,443 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-02 15:54:09,445 INFO CTaleNormalize Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_no_balanced_50kb.cool 2021-09-02 15:54:09,445 INFO CTaleNormalize Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_50kb.cool 2021-09-02 15:54:09,445 INFO CTaleNormalize Capture: chr11:32,190,000-32,335,000 2021-09-02 15:54:09,445 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_no_balanced_50kb.cool" "/tmp/tmpbrgh087t/inter.cool" 2021-09-02 15:54:09,460 INFO SimpleSubprocess TempFiles - 0:00:00 2021-09-02 15:54:09,460 DEBUG SimpleSubprocess ctale_normalize "/tmp/tmpbrgh087t/inter.cool" "chr11:32,190,000-32,335,000" 2021-09-02 15:54:10,531 INFO SimpleSubprocess NormalizeCool - 0:00:01 2021-09-02 15:54:10,531 DEBUG SimpleSubprocess cp "/tmp/tmpbrgh087t/inter.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_50kb.cool" 2021-09-02 15:54:10,546 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-02 15:54:10,549 DEBUG SimpleSubprocess echo > /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/vector.txt 2021-09-02 15:54:10,557 INFO SimpleSubprocess MakeVector - 0:00:00 2021-09-02 15:54:10,557 INFO AddWeight Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_5kb.cool 2021-09-02 15:54:10,557 INFO AddWeight Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/vector.txt 2021-09-02 15:54:10,558 INFO AddWeight Chromosome: chr11 2021-09-02 15:54:10,558 INFO AddWeight Resolution [bp]: 5000 2021-09-02 15:54:10,650 INFO AddWeight AddWeight successfully finished 2021-09-02 15:54:10,651 INFO AddWeight Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_10kb.cool 2021-09-02 15:54:10,651 INFO AddWeight Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/vector.txt 2021-09-02 15:54:10,651 INFO AddWeight Chromosome: chr11 2021-09-02 15:54:10,651 INFO AddWeight Resolution [bp]: 10000 2021-09-02 15:54:10,698 INFO AddWeight AddWeight successfully finished 2021-09-02 15:54:10,698 INFO AddWeight Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_20kb.cool 2021-09-02 15:54:10,698 INFO AddWeight Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/vector.txt 2021-09-02 15:54:10,698 INFO AddWeight Chromosome: chr11 2021-09-02 15:54:10,698 INFO AddWeight Resolution [bp]: 20000 2021-09-02 15:54:10,728 INFO AddWeight AddWeight successfully finished 2021-09-02 15:54:10,728 INFO AddWeight Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_25kb.cool 2021-09-02 15:54:10,728 INFO AddWeight Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/vector.txt 2021-09-02 15:54:10,729 INFO AddWeight Chromosome: chr11 2021-09-02 15:54:10,729 INFO AddWeight Resolution [bp]: 25000 2021-09-02 15:54:10,756 INFO AddWeight AddWeight successfully finished 2021-09-02 15:54:10,756 INFO AddWeight Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_50kb.cool 2021-09-02 15:54:10,756 INFO AddWeight Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/vector.txt 2021-09-02 15:54:10,756 INFO AddWeight Chromosome: chr11 2021-09-02 15:54:10,756 INFO AddWeight Resolution [bp]: 50000 2021-09-02 15:54:10,776 INFO AddWeight AddWeight successfully finished 2021-09-02 15:54:10,778 INFO Vector2HiC Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter.hic 2021-09-02 15:54:10,778 INFO Vector2HiC Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_norm.hic 2021-09-02 15:54:10,778 INFO Vector2HiC Vector: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/vector.txt 2021-09-02 15:54:10,778 INFO Vector2HiC Threads: 10 2021-09-02 15:54:10,798 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter.hic" "/tmp/tmpwhn1i_4n/inter.hic" 2021-09-02 15:54:11,046 INFO SimpleSubprocess TempFiles - 0:00:00 2021-09-02 15:54:11,046 INFO Vector2HiC Vector: vector c-tale_normalization chr11 5000 BP 2021-09-02 15:54:11,047 DEBUG SimpleSubprocess java -jar "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/common/juicer_tools.jar" addNorm -j 10 "/tmp/tmpwhn1i_4n/inter.hic" "/tmp/tmpwhn1i_4n/vector.txt" 2021-09-02 15:54:15,082 INFO SimpleSubprocess NormalizeHiC - 0:00:04 2021-09-02 15:54:15,082 INFO Vector2HiC Vector: vector c-tale_normalization chr11 10000 BP 2021-09-02 15:54:15,083 DEBUG SimpleSubprocess java -jar "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/common/juicer_tools.jar" addNorm -j 10 "/tmp/tmpwhn1i_4n/inter.hic" "/tmp/tmpwhn1i_4n/vector.txt" 2021-09-02 15:54:18,733 INFO SimpleSubprocess NormalizeHiC - 0:00:03 2021-09-02 15:54:18,733 INFO Vector2HiC Vector: vector c-tale_normalization chr11 20000 BP 2021-09-02 15:54:18,734 DEBUG SimpleSubprocess java -jar "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/common/juicer_tools.jar" addNorm -j 10 "/tmp/tmpwhn1i_4n/inter.hic" "/tmp/tmpwhn1i_4n/vector.txt" 2021-09-02 15:54:22,362 INFO SimpleSubprocess NormalizeHiC - 0:00:03 2021-09-02 15:54:22,363 INFO Vector2HiC Vector: vector c-tale_normalization chr11 25000 BP 2021-09-02 15:54:22,363 DEBUG SimpleSubprocess java -jar "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/common/juicer_tools.jar" addNorm -j 10 "/tmp/tmpwhn1i_4n/inter.hic" "/tmp/tmpwhn1i_4n/vector.txt" 2021-09-02 15:54:26,225 INFO SimpleSubprocess NormalizeHiC - 0:00:03 2021-09-02 15:54:26,225 INFO Vector2HiC Vector: vector c-tale_normalization chr11 50000 BP 2021-09-02 15:54:26,225 DEBUG SimpleSubprocess java -jar "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/common/juicer_tools.jar" addNorm -j 10 "/tmp/tmpwhn1i_4n/inter.hic" "/tmp/tmpwhn1i_4n/vector.txt" 2021-09-02 15:54:30,172 INFO SimpleSubprocess NormalizeHiC - 0:00:03 2021-09-02 15:54:30,173 DEBUG SimpleSubprocess cp "/tmp/tmpwhn1i_4n/inter.hic" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_norm.hic" 2021-09-02 15:54:30,484 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-02 15:54:30,536 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/merged_nodups.txt" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/merged_nodups.txt" 2021-09-02 15:54:36,275 INFO SimpleSubprocess CopyResult - 0:00:05 2021-09-02 15:54:36,276 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter.pairs.txt" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/inter.pairs.txt" 2021-09-02 15:54:36,721 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-02 15:54:36,721 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/vector.txt" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/vector.txt" 2021-09-02 15:54:36,732 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-02 15:54:36,732 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_norm.hic" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/inter.hic" 2021-09-02 15:54:37,165 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-02 15:54:37,166 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter.txt" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/inter_statistics.txt" 2021-09-02 15:54:37,176 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-02 15:54:37,176 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_no_balanced_5kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/inter_no_balanced_5kb.cool" 2021-09-02 15:54:37,197 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-02 15:54:37,197 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_5kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/inter_5kb.cool" 2021-09-02 15:54:37,227 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-02 15:54:37,228 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_no_balanced_10kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/inter_no_balanced_10kb.cool" 2021-09-02 15:54:37,247 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-02 15:54:37,247 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_10kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/inter_10kb.cool" 2021-09-02 15:54:37,275 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-02 15:54:37,275 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_no_balanced_20kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/inter_no_balanced_20kb.cool" 2021-09-02 15:54:37,292 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-02 15:54:37,293 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_20kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/inter_20kb.cool" 2021-09-02 15:54:37,310 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-02 15:54:37,310 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_no_balanced_25kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/inter_no_balanced_25kb.cool" 2021-09-02 15:54:37,325 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-02 15:54:37,325 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_25kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/inter_25kb.cool" 2021-09-02 15:54:37,341 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-02 15:54:37,341 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_no_balanced_50kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/inter_no_balanced_50kb.cool" 2021-09-02 15:54:37,356 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-02 15:54:37,356 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__/aligned/inter_50kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/inter_50kb.cool" 2021-09-02 15:54:37,372 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-02 15:54:37,844 DEBUG SimpleSubprocess rm -rf "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__" 2021-09-02 15:54:43,913 INFO SimpleSubprocess RemoveTemp - 0:00:06 2021-09-02 15:54:43,913 INFO BenchmarkPipeline 'SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507' FINISHED, SUMMARY TIME - 2:16:26